Select Publications

Complete List of Publications
* co-first authors
# co-corresponding authors

2024

Predicting gene level sensitivity to JAK-STAT signaling perturbation using a mechanistic-to-machine learning framework.

Cheemalavagu N., Shoger K.E., Cao Y.M., Michalides B.A., Botta S.A., Faeder J.R.#, Gottschalk R.A.#

Cell Systems. DOI: 10.1016/j.cels.2023.12.006.

2023

Isoform-specific optical activation of kinase function reveals p38-ERK signaling crosstalk.

Zhou W., Ryan A.,  Janosko C.P., Shoger K.E., Haugh J.M., Gottschalk R.A., Deiters A.

RSC Chemical Biology. DOI: 10.1039/d2cb00157h.

SARS-CoV-2 ORF8 Mediates Signals in Macrophages and Monocytes through MyD88 Independently of the IL-17 Receptor.

Ponde N.O, Shoger K.E., Khatun M.S., Sarkar M.K., Dey I., Taylor T.C., Cisney R.N., Arunkumar S.P., Gudjonsson J.E., Kolls J.K., Gottschalk R.A., Gaffen S.L.

Journal of Immunology. DOI: 10.4049/jimmunol.2300110.

Signaling is the pathway to macrophage function.

Rachel A. Gottschalk

Trends in Immunology. DOI: 10.1016/j.it.2023.04.007.

2022

Mechanisms encoding STAT functional diversity for context-specific inflammatory responses.

Myers S.A.*, Gottschalk R.A.*

Current Opinion in Immunology. DOI: 10.1016/j.coi.2022.01.001.

2021

Identification of Cell Surface Molecules That Determine the Macrophage Activation Threshold Associated With an Early Stage of Malignant Transformation.

Jacqueline C., Dracz M., Boothman S., Minden J.S., Gottschalk R.A., Finn O.J.

Frontiers in Immunology. DOI: 10.3389/fimmu.2021.749597.

CISH attenuates homeostatic cytokine signaling to promote lung-specific macrophage programming and function.

Shoger K.E., Cheemalavagu N., Cao Y.M., Michalides B.A., Chaudhri V.K., Cohen J.A., Singh H., Gottschalk R.A.

Science Signaling. DOI: 10.1126/scisignal.abe5137.

Volume control: Turning the dial on regulatory T cells.

Brown C.C.*#, Gottschalk R.A.*#

Cell. DOI: 10.1016/j.cell.2021.06.015..

Time will tell: The temporal code of immune threats.

Cheemalavagu N., Gottschalk R.A.

Immunity. DOI: 10.1016/j.immuni.2021.04.018.

2019

IFN-mediated negative feedback supports bacteria class-specific macrophage inflammatory responses.

Gottschalk R.A.*#, Dorrington M.G.*, Dutta B., Krauss K.S., Martins A.J., Uderhardt S., Chan W., Tsang J.S., Torabi-Parizi P., Fraser I.D., Germain R.N.#.

eLIFE. doi: 10.7554/eLife.46836.

2018

Dual roles for Ikaros in regulation of macrophage chromatin state and inflammatory gene expression.

Oh K.S.*, Gottschalk R.A.*#, Lounsbury N.W.*, Sun J., Dorrington M.G., Baek S., Sun G., Wang Z., Krauss K.S., Milner J.D., Dutta B., Hager G.L., Sung M.H., Fraser I.D.#

Journal of Immunology. doi: 10.4049/jimmunol.1800158.

2017

Anti-inflammatory chromatinscape suggests alternative mechanisms of glucocorticoid receptor action.

Oh K.S., Patel H., Gottschalk R.A., Lee W.S., Baek S., Fraser I.D., Hager G.L., Sung M.H.

Immunity. doi: 10.1016/j.immuni.2017.07.012.

Environment tunes propagation of cell-to-cell variation in the human macrophage gene network.

Martins A.J., Narayanan M., Prüstel T., Fixsen B., Park K., Gottschalk R.A., Lu Y., Pfannkoch C., Lau W.W., Wendelsdorf K.V., Tsang J.S.

Cell Systems. doi: 10.1016/j.cels.2017.03.002.

2016

Distinct NF-kB and MAPK activation thresholds uncouple steady-state microbe sensing from anti-pathogen inflammatory responses.

Gottschalk R.A.#, Martins A.J., Angermann B.R., Dutta B., Ng C.E., Uderhardt S., Tsang J.S., Fraser I.D., Meier-Schellersheim M., Germain R.N.#

Cell Systems. doi: 10.1016/j.cels.2016.04.016.

2015

Network representations of immune system complexity.

Subramanian N., Torabi-Parizi P., Gottschalk R.A., Germain R.N., Dutta B.

Wiley Interdisciplinary Reviews: Systems Biology and Medicine. doi: 10.1002/wsbm.1288.

2014

Switching of the relative dominance between feedback mechanisms in lipopolysaccharide-induced NF-kB signaling.

Sung M.H., Li N., Lao Q., Gottschalk R.A., Hager G.L., Fraser I.D.

Science Signaling. doi: 10.1126/scisignal.2004764.

2013

Recent progress using systems biology approaches to better understand molecular mechanisms of immunity.

Gottschalk R.A.*, Martins A.J.*, Sjoelund V.H., Angermann B.R., Lin B., Germain R.N.

Seminars in Immunology. doi: 10.1016/j.smim.2012.11.002.

Cutting Edge: chronic inflammatory liver disease in mice expressing a CD28-specific ligand.

Corse E., Gottschalk R.A., Park J.S., Sepulveda M.A., Loke P., Sullivan T.J., Johnson L.K., Allison J.P.

Journal of Immunology. doi: 10.4049/jimmunol.1202621.

2012

Distinct influences of peptide-MHC quality and quantity on in vivo T cell responses.

Gottschalk R.A., Hathorn M.M., Beuneu H., Corse E., Dustin M.L., Altan-Bonnet G., Allison J.P.

Proceeding of the National Academy of Sciences. doi: 10.1073/pnas.1119763109.

Expression of Helios in peripherally induced Foxp3+ regulatory T cells.

Gottschalk R.A., Corse E., Allison J.P.

Journal of Immunology. doi: 10.4049/jimmunol.1102964.

2011

Brief Reviews: Strength of TCR-Peptide/MHC interactions and in vivo T cell responses.

Corse E.*, Gottschalk R.A.*, Allison J.P.

Journal of Immunology. doi: 10.4049/jimmunol.1003650.

2010

Attenuated T cell responses to a high-potency ligand in vivo.

Corse E., Gottschalk R.A., Krogsgaard M., Allison J.P.

PLoS Biology. 8(9). doi: 10.1371/journal.pbio.1000481.

TCR ligand density and affinity determine peripheral induction of Foxp3 in vivo.

Gottschalk R.A., Corse E., Allison J.P.

Journal of Experimental Medicine. doi: 10.1084/jem.20091999.

Development of promyelocytic zinc finger and ThPOK-expressing innate gamma delta T cells is controlled by strength of TCR signaling and Id3.

Alonzo E.S., Gottschalk R.A., Das J., Egawa T., Hobbs R.M., Pandolfi P.P., Pereira P., Nichols K.E., Koretzky G.A., Jordan M.S., Sant’Angelo D.B.

Journal of Immunology. doi: 10.4049/jimmunol.0903218.